Conjunto de datos de cancer de seno de Wisconsin — 4:17#

4:17 min | Ultima modificación: Septiembre 28, 2021 | YouTube

https://scikit-learn.org/stable/datasets/toy_dataset.html

Este es el dataset de cancer de seno de wisconsin.

En este problema se desea determinar si una masa mamaria es un tumor benigno o maligno, a partir de las medidas obtenidas de imágenes digitalizadas de la aspiración con una aguja fina. Los valores representan las características de los núcleos celulares presentes en la imagen digital. La muestra contiene 569 ejemplos de resultados de las biopsias. Cada registro contiene 30 variables, las cuales corresponden a tres medidas (media, desviación estándar, peor caso) de diez características diferentes (radius, texture, …)

Los atributos predictivos son los siguientes:

- radius (mean of distances from center to points on the perimeter)

- texture (standard deviation of gray-scale values)

- perimeter

- area

- smoothness (local variation in radius lengths)

- compactness (perimeter^2 / area - 1.0)

- concavity (severity of concave portions of the contour)

- concave points (number of concave portions of the contour)

- symmetry

- fractal dimension ("coastline approximation" - 1)

Hay 212 (37.3%) muestras malignas y 357 benignas (62.7%).

[1]:

from sklearn.datasets import load_breast_cancer

[2]:

bunch = load_breast_cancer(
    # -----------------------------------------------------
    # If True, returns (data, target) instead of a Bunch
    # object.
    return_X_y=False,
)

bunch.keys()

[2]:

dict_keys(['data', 'target', 'target_names', 'DESCR', 'feature_names', 'filename'])

[3]:

bunch.target_names

[3]:

array(['malignant', 'benign'], dtype='<U9')

[4]:

bunch.feature_names

[4]:

array(['mean radius', 'mean texture', 'mean perimeter', 'mean area',
       'mean smoothness', 'mean compactness', 'mean concavity',
       'mean concave points', 'mean symmetry', 'mean fractal dimension',
       'radius error', 'texture error', 'perimeter error', 'area error',
       'smoothness error', 'compactness error', 'concavity error',
       'concave points error', 'symmetry error',
       'fractal dimension error', 'worst radius', 'worst texture',
       'worst perimeter', 'worst area', 'worst smoothness',
       'worst compactness', 'worst concavity', 'worst concave points',
       'worst symmetry', 'worst fractal dimension'], dtype='<U23')

[5]:

bunch.data[:2, :]

[5]:

array([[1.799e+01, 1.038e+01, 1.228e+02, 1.001e+03, 1.184e-01, 2.776e-01,
        3.001e-01, 1.471e-01, 2.419e-01, 7.871e-02, 1.095e+00, 9.053e-01,
        8.589e+00, 1.534e+02, 6.399e-03, 4.904e-02, 5.373e-02, 1.587e-02,
        3.003e-02, 6.193e-03, 2.538e+01, 1.733e+01, 1.846e+02, 2.019e+03,
        1.622e-01, 6.656e-01, 7.119e-01, 2.654e-01, 4.601e-01, 1.189e-01],
       [2.057e+01, 1.777e+01, 1.329e+02, 1.326e+03, 8.474e-02, 7.864e-02,
        8.690e-02, 7.017e-02, 1.812e-01, 5.667e-02, 5.435e-01, 7.339e-01,
        3.398e+00, 7.408e+01, 5.225e-03, 1.308e-02, 1.860e-02, 1.340e-02,
        1.389e-02, 3.532e-03, 2.499e+01, 2.341e+01, 1.588e+02, 1.956e+03,
        1.238e-01, 1.866e-01, 2.416e-01, 1.860e-01, 2.750e-01, 8.902e-02]])

[6]:

bunch.target

[6]:

array([0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1,
       0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0,
       0, 0, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 1, 1, 1, 1, 0, 1, 0, 0,
       1, 1, 1, 1, 0, 1, 0, 0, 1, 0, 1, 0, 0, 1, 1, 1, 0, 0, 1, 0, 0, 0,
       1, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 0, 1, 1, 0, 1,
       1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 0, 1, 1, 1, 0, 0, 1, 0, 1, 0,
       0, 1, 0, 0, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1,
       1, 1, 0, 1, 1, 1, 1, 0, 0, 1, 0, 1, 1, 0, 0, 1, 1, 0, 0, 1, 1, 1,
       1, 0, 1, 1, 0, 0, 0, 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 0, 0, 1, 0, 0,
       0, 0, 1, 0, 0, 0, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 0, 1, 1, 0, 0,
       1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 0, 1, 1,
       1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
       0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 1, 0, 1, 0, 0, 1, 1,
       1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1,
       1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 0, 0,
       0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0,
       0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 1, 0, 0,
       1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 0, 0, 1, 1,
       1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 0,
       1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 0, 0, 1, 0, 1, 1, 1, 1,
       1, 0, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0,
       1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1,
       1, 1, 1, 0, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 0, 0, 1, 0, 1, 0, 1, 1,
       1, 1, 1, 0, 1, 1, 0, 1, 0, 1, 0, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1,
       1, 1, 1, 1, 1, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
       1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1])

[7]:

X, y = load_breast_cancer(
    # -----------------------------------------------------
    # If True, returns (data, target) instead of a Bunch
    # object.
    return_X_y=True,
)

display(
    X[:5, :],
    y[:5],
)

array([[1.799e+01, 1.038e+01, 1.228e+02, 1.001e+03, 1.184e-01, 2.776e-01,
        3.001e-01, 1.471e-01, 2.419e-01, 7.871e-02, 1.095e+00, 9.053e-01,
        8.589e+00, 1.534e+02, 6.399e-03, 4.904e-02, 5.373e-02, 1.587e-02,
        3.003e-02, 6.193e-03, 2.538e+01, 1.733e+01, 1.846e+02, 2.019e+03,
        1.622e-01, 6.656e-01, 7.119e-01, 2.654e-01, 4.601e-01, 1.189e-01],
       [2.057e+01, 1.777e+01, 1.329e+02, 1.326e+03, 8.474e-02, 7.864e-02,
        8.690e-02, 7.017e-02, 1.812e-01, 5.667e-02, 5.435e-01, 7.339e-01,
        3.398e+00, 7.408e+01, 5.225e-03, 1.308e-02, 1.860e-02, 1.340e-02,
        1.389e-02, 3.532e-03, 2.499e+01, 2.341e+01, 1.588e+02, 1.956e+03,
        1.238e-01, 1.866e-01, 2.416e-01, 1.860e-01, 2.750e-01, 8.902e-02],
       [1.969e+01, 2.125e+01, 1.300e+02, 1.203e+03, 1.096e-01, 1.599e-01,
        1.974e-01, 1.279e-01, 2.069e-01, 5.999e-02, 7.456e-01, 7.869e-01,
        4.585e+00, 9.403e+01, 6.150e-03, 4.006e-02, 3.832e-02, 2.058e-02,
        2.250e-02, 4.571e-03, 2.357e+01, 2.553e+01, 1.525e+02, 1.709e+03,
        1.444e-01, 4.245e-01, 4.504e-01, 2.430e-01, 3.613e-01, 8.758e-02],
       [1.142e+01, 2.038e+01, 7.758e+01, 3.861e+02, 1.425e-01, 2.839e-01,
        2.414e-01, 1.052e-01, 2.597e-01, 9.744e-02, 4.956e-01, 1.156e+00,
        3.445e+00, 2.723e+01, 9.110e-03, 7.458e-02, 5.661e-02, 1.867e-02,
        5.963e-02, 9.208e-03, 1.491e+01, 2.650e+01, 9.887e+01, 5.677e+02,
        2.098e-01, 8.663e-01, 6.869e-01, 2.575e-01, 6.638e-01, 1.730e-01],
       [2.029e+01, 1.434e+01, 1.351e+02, 1.297e+03, 1.003e-01, 1.328e-01,
        1.980e-01, 1.043e-01, 1.809e-01, 5.883e-02, 7.572e-01, 7.813e-01,
        5.438e+00, 9.444e+01, 1.149e-02, 2.461e-02, 5.688e-02, 1.885e-02,
        1.756e-02, 5.115e-03, 2.254e+01, 1.667e+01, 1.522e+02, 1.575e+03,
        1.374e-01, 2.050e-01, 4.000e-01, 1.625e-01, 2.364e-01, 7.678e-02]])

array([0, 0, 0, 0, 0])

[8]:

#
# Carga a un dataframe de pandas
#
import pandas as pd

cancer = pd.DataFrame(
    bunch.data,
    columns=bunch.feature_names,
)

cancer["diagnosis"] = bunch.target_names[bunch.target]

cancer.head()

[8]:

	mean radius	mean texture	mean perimeter	mean area	mean smoothness	mean compactness	mean concavity	mean concave points	mean symmetry	mean fractal dimension	...	worst texture	worst perimeter	worst area	worst smoothness	worst compactness	worst concavity	worst concave points	worst symmetry	worst fractal dimension	diagnosis
0	17.99	10.38	122.80	1001.0	0.11840	0.27760	0.3001	0.14710	0.2419	0.07871	...	17.33	184.60	2019.0	0.1622	0.6656	0.7119	0.2654	0.4601	0.11890	malignant
1	20.57	17.77	132.90	1326.0	0.08474	0.07864	0.0869	0.07017	0.1812	0.05667	...	23.41	158.80	1956.0	0.1238	0.1866	0.2416	0.1860	0.2750	0.08902	malignant
2	19.69	21.25	130.00	1203.0	0.10960	0.15990	0.1974	0.12790	0.2069	0.05999	...	25.53	152.50	1709.0	0.1444	0.4245	0.4504	0.2430	0.3613	0.08758	malignant
3	11.42	20.38	77.58	386.1	0.14250	0.28390	0.2414	0.10520	0.2597	0.09744	...	26.50	98.87	567.7	0.2098	0.8663	0.6869	0.2575	0.6638	0.17300	malignant
4	20.29	14.34	135.10	1297.0	0.10030	0.13280	0.1980	0.10430	0.1809	0.05883	...	16.67	152.20	1575.0	0.1374	0.2050	0.4000	0.1625	0.2364	0.07678	malignant

5 rows × 31 columns

[9]:

#
# Carga desde un repo
# https://archive.ics.uci.edu/ml/datasets/breast+cancer+wisconsin+(diagnostic)
#
pd.read_csv(
    "https://raw.githubusercontent.com/jdvelasq/datalabs/master/datasets/wisc_bc_data.csv"
)

[9]:

	id	diagnosis	radius_mean	texture_mean	perimeter_mean	area_mean	smoothness_mean	compactness_mean	concavity_mean	concave_points_mean	...	radius_worst	texture_worst	perimeter_worst	area_worst	smoothness_worst	compactness_worst	concavity_worst	concave_points_worst	symmetry_worst	fractal_dimension_worst
0	842302	M	17.99	10.38	122.80	1001.0	0.11840	0.27760	0.30010	0.14710	...	25.380	17.33	184.60	2019.0	0.16220	0.66560	0.7119	0.2654	0.4601	0.11890
1	842517	M	20.57	17.77	132.90	1326.0	0.08474	0.07864	0.08690	0.07017	...	24.990	23.41	158.80	1956.0	0.12380	0.18660	0.2416	0.1860	0.2750	0.08902
2	84300903	M	19.69	21.25	130.00	1203.0	0.10960	0.15990	0.19740	0.12790	...	23.570	25.53	152.50	1709.0	0.14440	0.42450	0.4504	0.2430	0.3613	0.08758
3	84348301	M	11.42	20.38	77.58	386.1	0.14250	0.28390	0.24140	0.10520	...	14.910	26.50	98.87	567.7	0.20980	0.86630	0.6869	0.2575	0.6638	0.17300
4	84358402	M	20.29	14.34	135.10	1297.0	0.10030	0.13280	0.19800	0.10430	...	22.540	16.67	152.20	1575.0	0.13740	0.20500	0.4000	0.1625	0.2364	0.07678
...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...	...
564	926424	M	21.56	22.39	142.00	1479.0	0.11100	0.11590	0.24390	0.13890	...	25.450	26.40	166.10	2027.0	0.14100	0.21130	0.4107	0.2216	0.2060	0.07115
565	926682	M	20.13	28.25	131.20	1261.0	0.09780	0.10340	0.14400	0.09791	...	23.690	38.25	155.00	1731.0	0.11660	0.19220	0.3215	0.1628	0.2572	0.06637
566	926954	M	16.60	28.08	108.30	858.1	0.08455	0.10230	0.09251	0.05302	...	18.980	34.12	126.70	1124.0	0.11390	0.30940	0.3403	0.1418	0.2218	0.07820
567	927241	M	20.60	29.33	140.10	1265.0	0.11780	0.27700	0.35140	0.15200	...	25.740	39.42	184.60	1821.0	0.16500	0.86810	0.9387	0.2650	0.4087	0.12400
568	92751	B	7.76	24.54	47.92	181.0	0.05263	0.04362	0.00000	0.00000	...	9.456	30.37	59.16	268.6	0.08996	0.06444	0.0000	0.0000	0.2871	0.07039

569 rows × 32 columns